Instrument Data Integration Specialist (Contractor)

Benchling

Contract Position

Summary

Develop standardized instrument data models to drive the biotechnology industry towards FAIR data standards and facilitate seamless integration across the Benchling platform.

What you'll do

  • Convert instrument outputs into standardized data models to streamline downstream analysis and ensure consistent instrument measurements
  • Work with the Allotrope Simple Model (ASM), a JSON based standard
  • Collect, evaluate, and compare instrument data output files to determine what is ‘standard’ across instruments in a given instrument category
  • Gather, review, and assess existing Allotrope simple model (ASM) specifications
  • Map standard instrument output data from files to the Allotrope simple model (ASM) to determine opportunities for standard model extensions
  • Evaluate Allotrope data model structure to determine how & where to add fields to the ASM to make it easy for scientific analysis
  • Participate with the Allotrope models working group and submit draft proposals for new ASMs or revisions
  • Define requirements for input instructions to be sent from Benchling to software that controls instruments
  • Define requirements for ingesting instrument results data from software that controls instruments, in addition to how that data is standardized to the Allotrope data model
  • Define end-to-end scientific workflows related to the experiment & techniques the instrument & software is used for

Requirements

  • Subject matter expertise in one or several instrument categories required (See below)
  • Experience integrating one or more of software systems that manage instrument data listed below with LIMS, electronic notebook or other downstream systems
  • Data modeling experience, especially in the realm of bio-tech
  • Familiarity with JSON concepts
  • Strong analytical, problem-solving, requirements definition and communication skills

Apply

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Location

San Francisco, CA

Contract Length

Contractor

Compensation

$50 - $120 (per hour)

Keywords

allotrope simple model (asm) json lims electronic notebook

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Develop standardized instrument data models to drive the biotechnology industry towards FAIR data standards and facilitate seamless integration across the Benchling platform.